Basic Information
VIS ID
TVIS30011487
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.5
Reference genome
End
276724/276724 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-6743/Upstream/67318; hsa-let-7a-2/Downstream/291365;
Nearby gene
NLRP6(No orient, 1846)
Upstream sequence
tctttgtgggaaagttttttttccctgtaattagtaattcaatctctttacttgttataATTtgtcttagtctattctcacattgctgtaaagacatacc
Downstream sequence
tgagacagggtaatttataaagaaaagaggtttaactagctcctggttctgtgggctgtacagacttttgcttctggggaggcctcaggaaacttacaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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