Basic Information
VIS ID
TVIS30011490
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.5
Reference genome
GRCh37/hg19
Start
512848/512848 (Hg38)
End
512848/512848 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-6743/Upstream/303442; hsa-let-7a-2/Downstream/55241;
Nearest TSS
ENST00000527297/Upstream/5548; ENST00000526431/Downstream/16059;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/4839, chr11-CpG: 130/Downstream/5834
Nearby gene
RNH1(No orient, 5565)
Nearest cancer related gene
RNH1(TSG, No orient, 5565)
Upstream sequence
ccatgccattTAAAGTAATGGTGGATTAACTCAATGCTACGTCGCCTTCTAGTtgatggagggcaggcaagacccacagtggggctgagcccctcgaggg
Downstream sequence
ttcctggctttgcccaggaaacaattcaagggcaagctggaagtgaaagtaaacagGCCAGGCATGGTGggagttactacccctttccatggcaatgacc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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