Basic Information
VIS ID
TVIS30011492
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.5
Reference genome
GRCh37/hg19
Start
1352012/1330782 (Hg38)
End
1352012/1330782 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/74112; hsa-let-7a-2/Downstream/528682;
Nearest TSS
ENST00000527297/Upstream/21013; ENST00000528596/Downstream/59117;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/20514, chr11-CpG: 167/Downstream/5703
Nearby gene
TOLLIP-AS1(No orient, 20075)
Upstream sequence
ctggagtgtggtggcatgatcatggctcactgcagcctcaacttcctgggctcacgtgatcctcccacttctgcctcccgagtaggtggaaccactgtgc
Downstream sequence
ttggctaactgttttttttttttttcttttttcttttagtaagacacgatgtctcactatgatgctcaggctggtcttgaactcctgggctcaagtgatc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate