Basic Information
VIS ID
TVIS30011494
Fusion event
HIV-RHOG integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
3851383/3830153 (Hg38)
End
3851383/3830153 (Hg38)
Orient
+
Location type
Intronic
Target gene
RHOG
miRNAs that regulate target gene
hsa-let-7b-5p ; hsa-mir-124-3p ; hsa-mir-216b-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-3191-5p ; hsa-mir-6728-3p ; hsa-mir-186-3p ; hsa-mir-6769a-3p ; hsa-mir-147a ; hsa-mir-644a ; hsa-mir-3911 ; hsa-mir-6826-5p ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-892a ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-1296-5p ; hsa-mir-2909 ; hsa-mir-3622a-5p ; hsa-mir-4423-3p ; hsa-mir-4436b-3p ; hsa-mir-4632-5p ; hsa-mir-4761-3p ; hsa-mir-5582-5p ; hsa-mir-6081 ; hsa-mir-657 ; hsa-mir-6735-5p ; hsa-mir-6847-5p ; hsa-mir-6879-5p ; hsa-mir-7843-5p
Nearest miRNA
hsa-mir-210/Upstream/1657015; hsa-let-7a-2/Downstream/25909;
Nearest TSS
ENST00000527297/Upstream/5582; ENST00000524822/Downstream/498;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/32076, chr11-CpG: 79/Downstream/10472
Upstream sequence
AATCTTTCAGGCCCAACTAGGAAGGATGAAGTCAAGAGTAAGACAAAAACTTGACTTTCCCCTCAATCTTCTGTCCATTTCCTGAGATCCTGGCATGTGC
Downstream sequence
CTCTGAAAGATTTTAGAGACTTCCAGACTCTTGGATAGAAAATACCATCAttaagaacatagatgctagagtaagactcgcaggtattctaatcacagct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate