Basic Information
VIS ID
TVIS30011496
Fusion event
HIV-TRIM22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
5724305/5703075 (Hg38)
End
5724305/5703075 (Hg38)
Orient
+
Location type
Intronic
Target gene
TRIM22
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-146a-5p ; hsa-mir-26b-5p
Nearest miRNA
hsa-mir-210/Upstream/1846934; hsa-let-7a-2/Downstream/1531691;
Nearest TSS
ENST00000527297/Upstream/6573; ENST00000493494/Downstream/3475;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1094775, chr11-CpG: 32/Downstream/531463
Upstream sequence
ttgtgtgtgtatattctttgagatcatttacatactgaatcatgctgtctgtaaataaatatagttAAttttaaaactgcaacttttattttagatacag
Downstream sequence
ggagtatatgtgcaggtttgttacatgggaatattgggtgatgctgaggtttgggatacagatcccatcacccaggtaatgagcatattacccaatcagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate