Basic Information
VIS ID
TVIS30011499
Fusion event
HIV-LOC107984019 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
6923842/6902611 (Hg38)
End
6923842/6902611 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107984019
Nearest miRNA
hsa-mir-210/Upstream/3046470; hsa-let-7a-2/Downstream/332155;
Nearest TSS
ENST00000527297/Upstream/10012; ENST00000317834/Downstream/18363;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/218899, chr11-CpG: 58/Downstream/23678
Nearby gene
OR2D2(No orient, 10111)
Upstream sequence
AAAAATCATAAGGGTAAAGACTTCTTGATTTGCTTAGATTAAATTATAAAATATACATGTGATGCAAAAATACAGAAAGTCAACTGGAAAAATACAAAAC
Downstream sequence
AACTTATTTCCAAGGTAAAATCAAAGAGCTATTTTTTTTTCATGTTATTCAAGGAtttttcaaagcactaaaggaaagttgaacagcccaatttaaaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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