Basic Information
VIS ID
TVIS30011508
Fusion event
HIV-INSC integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
15152478/15130932 (Hg38)
End
15152478/15130932 (Hg38)
Orient
+
Location type
Intronic
Target gene
INSC
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-210/Upstream/2967165; hsa-let-7a-2/Downstream/838601;
Nearest TSS
ENST00000527297/Upstream/15994; ENST00000530161/Downstream/18170;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/15933, chr11-CpG: 25/Downstream/519211
Upstream sequence
taatattctcttatctctgctgcatctgtagaaataaacctcttttattgccaatatcatttatttgtttcctcttttttctgattttttccagatcttg
Downstream sequence
ccagcagtttattttatgttttcaaaaaccaactttagtcattttgtttgttttgttttgtattttgatttgtgttttatttaatgtttgttcctatctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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