Basic Information
VIS ID
TVIS30011511
Fusion event
HIV-ELP4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p13
Reference genome
GRCh37/hg19
Start
31582561/31561014 (Hg38)
End
31582561/31561014 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11E
Target gene
ELP4
Nearest miRNA
hsa-mir-210/Upstream/3083466; hsa-let-7a-2/Downstream/3380823;
Nearest TSS
ENST00000527297/Upstream/51089; ENST00000639097/Downstream/42867;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/51060, chr11-CpG: 98/Downstream/237498
Upstream sequence
taggctgtacaggttggtagcctagcagcagtaagctataccatatagcctaggtatgtagtaggctctaccatctaccacctacatttttctaagtaca
Downstream sequence
ctctgtgatgtttgcacagtgacagaatcTCATTTCTCCTTAAACAATGCATGACTTTCTATCACCCACACATACTCATGCATGTGTATACATGTATACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate