Basic Information
VIS ID
TVIS30011512
Fusion event
HIV-ELP4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p13
Reference genome
GRCh37/hg19
Start
31588320/31566773 (Hg38)
End
31588320/31566773 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA11E
Target gene
ELP4
Nearest miRNA
hsa-mir-210/Upstream/3089225; hsa-let-7a-2/Downstream/3375064;
Nearest TSS
ENST00000527297/Upstream/56848; ENST00000639097/Downstream/37108;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/56819, chr11-CpG: 98/Downstream/231739
Upstream sequence
CCATttttatcagaatctgagaggccattgattgtaagatgcatcattattaaatatactaagagaaaaaaagtattcccacctgaactaagaacgtttc
Downstream sequence
tattcacttaaattttttatttaattcttattggaagaggtttcttagacttacttattttttaagtcatatcacacctgtctataaaaaaagaagcaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate