Basic Information
VIS ID
TVIS30011513
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p13
Reference genome
GRCh37/hg19
Start
32897887/32876341 (Hg38)
End
32897887/32876341 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA11E
Nearest miRNA
hsa-mir-210/Upstream/4398793; hsa-let-7a-2/Downstream/2065496;
Nearest TSS
ENST00000527297/Upstream/46398; ENST00000528155/Downstream/16837;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/45936, chr11-CpG: 177/Downstream/16102
Nearby gene
QSER1(No orient, 16837)
Upstream sequence
CTCAGCCCCTCTAACTTAATTTTTCCCATTAGGTTATGTTCTTCAACTAGAATTTCTCTTGGCCTCAGGTTTTGTTTGTTTGTTTATTCATTTGTCCAGG
Downstream sequence
AACTTAAATGTAATAGCTGGAGAAGAACCACAGAACTTTAGTGACTTTGATAGATAAGTGTCTGAAAACGTGGCAGAGTGTTGTCACTCTAAATAAGATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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