VISDB Viral Integration Site DataBase

VIS ID

TVIS30011515

Fusion event

HIV-CD44 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

p13

Reference genome

Start

End

35210806/35189259 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-328-3p ; hsa-mir-373-3p ; hsa-mir-199a-3p ; hsa-mir-520c-3p ; hsa-mir-34a-5p ; hsa-mir-608 ; hsa-mir-330-3p ; hsa-mir-216a-5p ; hsa-mir-708-5p ; hsa-mir-199a-5p ; hsa-mir-1-3p ; hsa-mir-30a-5p ; hsa-mir-16-5p ; hsa-mir-744-5p ; hsa-mir-320a ; hsa-mir-15b-5p ; hsa-mir-143-3p ; hsa-mir-145-5p ; hsa-mir-218-5p ; hsa-mir-4776-3p ; hsa-mir-4642 ; hsa-mir-192-3p ; hsa-mir-6826-3p ; hsa-mir-3121-5p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-4793-5p ; hsa-mir-5196-3p ; hsa-mir-942-3p ; hsa-mir-4802-3p ; hsa-mir-4753-3p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-130b-5p ; hsa-mir-552-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-6716-5p ; hsa-mir-302d-5p ; hsa-mir-6832-3p ; hsa-mir-302b-5p ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-520a-3p ; hsa-mir-125b-5p ; hsa-mir-328-5p ; hsa-mir-1321 ; hsa-mir-149-3p ; hsa-mir-197-5p ; hsa-mir-3132 ; hsa-mir-3175 ; hsa-mir-3529-5p ; hsa-mir-379-5p ; hsa-mir-4270 ; hsa-mir-4441 ; hsa-mir-4524b-3p ; hsa-mir-4728-5p ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-6731-5p ; hsa-mir-6754-5p ; hsa-mir-6755-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-765 ; hsa-mir-8085

Nearest miRNA

hsa-mir-1343/Upstream/247339; hsa-let-7a-2/Downstream/820839;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/49806, chr11-CpG: 143/Downstream/229615

Nearest cancer related gene

CD44(TSG, No orient, 0)

Upstream sequence

GATGTTGATCTTCATGTATATCTGTGCTTGTTAATTTCCAGGTTGAATTTCACAGAGAACGGCAAATGCTCTTCTGTATTTAGACCTGCTGGTTTCCTAG

Downstream sequence

CCAGAAGTGGGTGTTTGCACAAGTGGACAAAACTTGCCCCTTAAAAAAGAAAATCAAAATCTTCATCATTTTGCAGATGTATCTTCCCTGCTGAGGCTAT