Basic Information
VIS ID
TVIS30011524
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
48812439/48790887 (Hg38)
End
48812439/48790887 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/694029; hsa-let-7a-2/Downstream/7952986;
Nearest TSS
ENST00000527297/Upstream/302170; ENST00000332682/Downstream/236614;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/809269, chr11-CpG: 17/Downstream/89258
Nearby gene
TRIM51FP(No orient, 240713)
Upstream sequence
ttcaactctgtgagttgaatgcacacatcacaaggaagtttttgataatgcttctgtctagtttttacatgaagatatttccttttccctcataggtcac
Downstream sequence
aaagggctcccaatatccaattgtagattctacaaaaagagtttttcaaatatgctcaattaaaagaaagtttcaaccctgtgagatgaatgcacacatc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate