Basic Information
VIS ID
TVIS30011531
Fusion event
HIV-ZFP91-CNTF integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
58355250/58587777 (Hg38)
End
58355250/58587777 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
ZFP91-CNTF
Nearest miRNA
hsa-mir-129-2/Upstream/946491; hsa-let-7a-2/Downstream/1007300;
Nearest TSS
ENST00000527297/Upstream/8605; ENST00000422974/Downstream/22202;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/7929, chr11-CpG: 40/Downstream/317601
Upstream sequence
AAAGTAAAAGAATAGTCTACCTACACGTAATTTTTAGTTATCCCAGTGTTCATTTTAACTTATTTCACTTTCTAACCTCTGACTAGACATGTTATGAAGC
Downstream sequence
CTAATTTTTTTTTCTCCCATCTGTTATGTCCTTAGTGAGGAATAATAGTTAAAACTGCCTCTCAAGATAAAACATAAAAATGGAGACCAGAATACCTTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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