Basic Information
VIS ID
TVIS30011532
Fusion event
HIV-CD6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
60759683/60992211 (Hg38)
End
60759683/60992211 (Hg38)
Orient
+
Location type
Intronic
Target gene
CD6
Nearest miRNA
hsa-mir-129-2/Upstream/783055; hsa-let-7a-2/Downstream/516385;
Nearest TSS
ENST00000527297/Upstream/20345; ENST00000538288/Downstream/12200;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/40690, chr11-CpG: 100/Downstream/15353
Upstream sequence
tcaagcaatccacccaccttggcctcccaaagtgctgggattacagcgtgagccacagcacccagcctcatttttttatttttaaatttattttgtagag
Downstream sequence
atagggtctcactgtgttgcccaggctgttctcaaactcctggcctcaagcaatcctcctgcctcagccactgaaagtgctgggattacaagtgtgaacc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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