Basic Information
VIS ID
TVIS30011536
Fusion event
HIV-CD6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
60767805/61000333 (Hg38)
End
60767805/61000333 (Hg38)
Orient
+
Location type
Intronic
Target gene
CD6
Nearest miRNA
hsa-mir-129-2/Upstream/791177; hsa-let-7a-2/Downstream/508263;
Nearest TSS
ENST00000527297/Upstream/28467; ENST00000538288/Downstream/4078;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/48812, chr11-CpG: 100/Downstream/7231
Upstream sequence
tggaattactggattgaaagAGCTTGGTTTGCTGTTGTTGTTAAGGCTGTTGGCATCTGTGTTTGCAAACACTTTCTGTTGATTTTTTTTTTTAACTATA
Downstream sequence
CTTCTAGCAGGTGACACATGCACCTGGCTGCACCACTTGTAGATTCCACCTCCATGTTTCCATCGTCCCTTTCCACCCTGCCTCTGGCTCTGTACAGCAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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