Basic Information
VIS ID
TVIS30011537
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
62032342/62264870 (Hg38)
End
62032342/62264870 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/386592; hsa-let-7a-2/Downstream/302141;
Nearest TSS
ENST00000527297/Upstream/4321; ENST00000525380/Downstream/5285;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/140797, chr11-CpG: 98/Downstream/72437
Nearby gene
SCGB2A2(No orient, 5285)
Upstream sequence
atccagttgggacaagcaaaaCCCACTATTGGGAAAGGTTCTTCAGGGTGGGGAAAGTGAAAAAGTGTCCCCACTGAGACCCATTGCTCCAGCAGCAGGG
Downstream sequence
ATACTTTGTATAAGTTCCTCCATATGCCTCTCCTGAGGCCCTGGCGTAACAGAGGCTCATGACAGTGGGCTGACTACTGTTTTTGGGATAATGTTGGCAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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