Basic Information
VIS ID
TVIS30011539
Fusion event
HIV-HNRNPUL2-BSCL2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
62480878/62713406 (Hg38)
End
62480878/62713406 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
HNRNPUL2-BSCL2
Nearest miRNA
hsa-mir-129-2/Upstream/146335; hsa-let-7a-2/Downstream/76409;
Nearest TSS
ENST00000527297/Upstream/3561; ENST00000530625/Downstream/10579;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/3397, chr11-CpG: 142/Downstream/13116
Upstream sequence
TCTATTATAACATAATCTTGCCCTAAGGGAATTTCTTTGGGCTCCAGTTTTTACCTCCTTGCCTTGACATTATAAGCAAAGCTTTCTCAAACTCCCTTAA
Downstream sequence
TAATAATACAAAGTTAATGTGTTACAGAAAAATTCATGCAATCACTCCACTGCCACACAGAAATCCATTTGAGGACACCGCAGGGAAGCAGGTGCCAAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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