Basic Information
VIS ID
TVIS30011548
Fusion event
HIV-RASGRP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
64501039/64733567 (Hg38)
End
64501039/64733567 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
RASGRP2
Nearest miRNA
hsa-mir-1237/Upstream/364864; hsa-let-7a-2/Downstream/144956;
Nearest TSS
ENST00000527297/Upstream/10379; ENST00000594089/Downstream/1699;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/9893, chr11-CpG: 320/Downstream/8394
Upstream sequence
gggttaaggctgagaccgctgcatgaagctgaggcctccatcgtctcaaagggtcattctcactgaaaaggtggtctagataaaaatccacccaccaacc
Downstream sequence
cagggagaaaacatggaactcaactacctctgcctaaaatctgggagaagaaataaagCAGCTATGATAAAAGCCACAAGCAGAACTAGATTTATGCTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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