VISDB Viral Integration Site DataBase

VIS ID

TVIS30011560

Fusion event

HIV-EIF1AD integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.1

Reference genome

Start

End

65767520/66000049 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-877-3p ; hsa-mir-93-3p ; hsa-mir-10a-5p ; hsa-mir-6839-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-5591-3p ; hsa-mir-1257 ; hsa-mir-299-5p ; hsa-mir-629-5p ; hsa-mir-509-3p ; hsa-mir-7854-3p ; hsa-mir-4257 ; hsa-mir-4266 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-342-3p ; hsa-mir-383-3p ; hsa-mir-1228-3p ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-5684 ; hsa-mir-670-5p ; hsa-mir-6845-5p ; hsa-mir-6762-5p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-4732-3p ; hsa-mir-345-3p ; hsa-mir-2114-5p ; hsa-mir-5197-3p ; hsa-mir-4319 ; hsa-mir-125a-5p ; hsa-mir-125b-5p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-1827 ; hsa-mir-196a-3p ; hsa-mir-2467-5p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3122 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3913-5p ; hsa-mir-3929 ; hsa-mir-3940-3p ; hsa-mir-3974 ; hsa-mir-4419b ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4477b ; hsa-mir-4478 ; hsa-mir-450a-1-3p ; hsa-mir-4530 ; hsa-mir-4649-3p ; hsa-mir-4722-5p ; hsa-mir-4728-5p ; hsa-mir-4729 ; hsa-mir-4768-3p ; hsa-mir-4786-5p ; hsa-mir-485-5p ; hsa-mir-5696 ; hsa-mir-6513-5p ; hsa-mir-665 ; hsa-mir-6740-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6808-5p ; hsa-mir-6883-5p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-7856-5p ; hsa-mir-7977 ; hsa-mir-887-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-10392/Upstream/350796; hsa-let-7a-2/Downstream/934385;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/23254, chr11-CpG: 86/Downstream/1877

Upstream sequence

tttttgtagagacaaggtctcattatgctgcccaggctggtctcaagcgatcctcccatctcagcctctcaaagtgccaggattacaggagtaatccTCT

Downstream sequence

CACCTCTCTTGATCCAGATGTTCTTGCGGTATTTGGAGGGCATGCTCACCAGGAAGCGCTGCCCTTGGGCTGTCTCCACCTCATGCAGATTGTTCCCTGG