VISDB Viral Integration Site DataBase

VIS ID

TVIS30011592

Fusion event

HIV-GRK2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.2

Reference genome

Start

End

67048344/67280873 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-153-5p ; hsa-mir-593-5p ; hsa-mir-767-5p ; hsa-mir-4269 ; hsa-mir-6715b-5p ; hsa-mir-340-5p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-3163 ; hsa-mir-4742-5p ; hsa-mir-3912-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-4443 ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-7847-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-1827 ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-4795-5p ; hsa-mir-6733-3p ; hsa-mir-5190 ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-211-3p ; hsa-mir-9500 ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-130a-5p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-23c ; hsa-mir-302b-5p ; hsa-mir-302d-5p ; hsa-mir-335-3p ; hsa-mir-338-3p ; hsa-mir-3613-3p ; hsa-mir-4262 ; hsa-mir-4639-3p ; hsa-mir-4668-3p ; hsa-mir-4690-3p ; hsa-mir-4711-5p ; hsa-mir-500b-3p ; hsa-mir-5096 ; hsa-mir-548c-3p ; hsa-mir-5685 ; hsa-mir-6794-3p ; hsa-mir-769-5p ; hsa-mir-127-3p ; hsa-mir-1297 ; hsa-mir-194-3p ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-3153 ; hsa-mir-4465 ; hsa-mir-4668-5p ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-6776-5p

Nearest miRNA

hsa-mir-10392/Upstream/235165; hsa-let-7a-2/Downstream/209372;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/13684, chr11-CpG: 49/Downstream/4050

Upstream sequence

CAACATCCACGTGAGTGGGCTTGGGTGGGGCATGGAAAGCCACGCACCCTGCTGCTCCTCTCCCGGGAGCTGGGCCTGTGGCTTGGCTGGGAGGGGGAGG

Downstream sequence

TCAGGGGATGTCTGTCCTTTAGCCCCCAGGGCCGTGGCTATGGGGGTCAGGGCCGGGATCCCAGCATGGGGAGGCCGGAGCAGGTAAATATGTGGCAAGG