Basic Information
VIS ID
TVIS30011617
Fusion event
HIV-NARS2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
78197824/78486778 (Hg38)
End
78197824/78486778 (Hg38)
Orient
-
Location type
Intronic
Target gene
NARS2
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-16-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-10392/Upstream/3151592; hsa-let-7a-2/Downstream/915244;
Nearest TSS
ENST00000527297/Upstream/43019; ENST00000526976/Downstream/46398;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/68424, chr11-CpG: 53/Downstream/87582
Upstream sequence
cacaacattaaaaacagccaggatatacttaaaaattaccggacatacaaagaaccaggaaaatcttatgaattctcatgagaaaaaataaccaacagac
Downstream sequence
acatacacatagaagactcaaatactggaattatctgacaatttgatgcaggtattataaacatcttccacaggtaaagggaaacattcttaaagagaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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