Basic Information
VIS ID
TVIS30011622
Fusion event
HIV-MTMR2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q21
Reference genome
GRCh37/hg19
Start
95568535/95835371 (Hg38)
End
95568535/95835371 (Hg38)
Orient
-
Location type
Exonic
Target gene
MTMR2
miRNAs that regulate target gene
hsa-mir-34a-5p
Nearest miRNA
hsa-mir-10392/Upstream/1368791; hsa-let-7a-2/Downstream/506067;
Nearest TSS
ENST00000527297/Upstream/9688; ENST00000332349/Downstream/52890;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/44492, chr11-CpG: 46/Downstream/88377
Upstream sequence
CCCTGATCTTACAGTCCTTTATACAACAGTTTGGACAGGAGTGACACACTGTGCAGGAGAGCTGGCTCTCTCTGAGGATGAGGTTGATCGGTTAGAAATC
Downstream sequence
TCTCTCTGTAGTTCCTCTACTTTTTTCTGAAGCTCTGCTCGTTTAGCAAGAAGTTCTTTGTATCTGTTGTGAATAGGTTCCTGCAAGAGCAAAACATAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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