Basic Information
VIS ID
TVIS30011625
Fusion event
HIV-CNTN5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
100035699/100164967 (Hg38)
End
100035699/100164967 (Hg38)
Orient
-
Location type
Intronic
Target gene
CNTN5
Nearest miRNA
hsa-mir-10392/Upstream/3823441; hsa-let-7a-2/Downstream/1354853;
Nearest TSS
ENST00000527297/Upstream/94566; ENST00000524560/Downstream/26210;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1143876, chr11-CpG: 64/Downstream/522225
Upstream sequence
aaagagattgataatccctgacctatgacactttttaaaaatcaagggagatattacacataaaagtcataaaacCataaaatattgtataaatgtatat
Downstream sequence
tttttacttattttttaaGCAGTCCACAGTCAATCTCAGGTTCTAGTTGATAGGTTTCAGCTAAGGAGTTGTCTGTTGAAAGCCGGAGTGCATCAAAGTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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