Basic Information
VIS ID
TVIS30011627
Fusion event
HIV-LOC102723879 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
104221403/104350675 (Hg38)
End
104221403/104350675 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102723879
Nearest miRNA
hsa-mir-10392/Upstream/500695; hsa-let-7a-2/Downstream/6997082;
Nearest TSS
ENST00000527297/Upstream/186296; ENST00000527177/Downstream/258621;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/186345, chr11-CpG: 31/Downstream/1259724
Upstream sequence
TCTTAAAGCTAAAGTATATGAATTAGCCTGTGATTGAACTGGTggcactctattttaatggtttatatacagtttttatttaattccaacaaaaacctag
Downstream sequence
tgatgtgggcacatttatgatccacatcttacagatgaggaaactgatctatggaaggattaagcaattATTAAGCAGTTTACTTATAAAACCACTGAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate