Basic Information
VIS ID
TVIS30011628
Fusion event
HIV-LOC105369466 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
104551632/104680904 (Hg38)
End
104551632/104680904 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105369466
Nearest miRNA
hsa-mir-10392/Upstream/830924; hsa-let-7a-2/Downstream/6666853;
Nearest TSS
ENST00000527297/Upstream/71583; ENST00000527177/Downstream/266288;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/516574, chr11-CpG: 31/Downstream/929495
Upstream sequence
gtaattagattatgaggaaaactcatatcaggagcatggtgtcagttcatcccaatatcggccatgctagctttggtcattttagttataatgatattac
Downstream sequence
cacactaacaaaaatgtgggaagatgttttgatgtaatagaaatttctgattctcatcaaatttcctggtacaagtttcagcatcaattgacatatttta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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