Basic Information
VIS ID
TVIS30011638
Fusion event
HIV-LOC100131626 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
118262808/118392093 (Hg38)
End
118262808/118392093 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA11B
Target gene
LOC100131626
Nearest miRNA
hsa-mir-10392/Upstream/4942005; hsa-let-7a-2/Downstream/251907;
Nearest TSS
ENST00000527297/Upstream/13592; ENST00000534385/Downstream/9061;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/32440, chr11-CpG: 32/Downstream/9453
Upstream sequence
TATGTTTGTAGTTGGTAGTTGGCTTTTATTGGAATATGCATACATTTTAAAGATTAAAATACTATATTGTATTTAGCTAAATCCCTTTGGTTAGAGTATG
Downstream sequence
ACAGAGCTCTATTAGCAGGTAAGAAGAAGGAAGATCATGGCACAAAAGTCTAATAGAAAACCTTCCTTATTGCTGTCAGTCTTCCCTCTATTGAGTTTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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