Basic Information
VIS ID
TVIS30011643
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
118687461/118816752 (Hg38)
End
118687461/118816752 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA11B
Nearest miRNA
hsa-mir-10392/Upstream/172673; hsa-let-7a-2/Downstream/93956;
Nearest TSS
ENST00000527297/Upstream/25498; ENST00000292174/Downstream/67014;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/24435, chr11-CpG: 45/Downstream/93736
Nearby gene
DDX6(No orient, 25489)
Nearest cancer related gene
DDX6(OG, No orient, 25489)
Upstream sequence
ATTTATTTAATGTGTATTAGCTTTTAAAATGATTTATTCTATTGTATGTCACACAGATGGTCAGAAGACACCAAATTTCCTATGTTTCTAAGAGGTAGGG
Downstream sequence
CAAGCCCTCTTTTGTCATGGTAGTCATCAAATAATTCCATACGTTATctttacaagtgttccttaaacctcacagcaaccctaagaggaatatactagta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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