VISDB Viral Integration Site DataBase

VIS ID

TVIS30011655

Fusion event

HIV-ETS1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q24.3

Reference genome

Start

End

128338972/128469077 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-9-5p ; hsa-mir-200b-3p ; hsa-mir-31-5p ; hsa-mir-155-5p ; hsa-mir-193b-3p ; hsa-mir-208a-3p ; hsa-mir-221-3p ; hsa-mir-222-3p ; hsa-mir-125b-5p ; hsa-mir-10a-5p ; hsa-mir-30c-5p ; hsa-mir-145-5p ; hsa-mir-200c-3p ; hsa-mir-1-3p ; hsa-mir-499a-5p ; hsa-mir-1202 ; hsa-mir-3972 ; hsa-mir-5006-5p ; hsa-mir-23b-3p ; hsa-mir-570-3p ; hsa-mir-584-3p ; hsa-mir-7852-3p ; hsa-mir-377-3p ; hsa-mir-5003-5p ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-543 ; hsa-mir-4776-3p ; hsa-mir-1228-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-8064 ; hsa-mir-4643 ; hsa-mir-1825 ; hsa-mir-632 ; hsa-mir-4288 ; hsa-mir-346 ; hsa-mir-2276-3p ; hsa-mir-4772-3p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-4666b ; hsa-mir-5011-3p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-4328 ; hsa-mir-654-3p ; hsa-mir-506-3p ; hsa-mir-144-3p ; hsa-mir-199a-5p ; hsa-mir-324-5p

Nearest miRNA

hsa-let-7a-2/Upstream/1480535; hsa-mir-4697/Downstream/53313;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/17077, chr11-CpG: 95/Downstream/52740

Nearest cancer related gene

ETS1(OG, No orient, 0)

Upstream sequence

atattttctaaatTACATTACTGAAACAAACCTCCTCTGAAGAAAGGCATATGGATTAGAAAGTCCGCTCAAATGGCTTCTCTCTATTAAACAATATTTG

Downstream sequence

GGGCCAAACAATATGGGTGACCCTCAGGCTGCATTTCATCAACGTGTTCCCAAAAATGAAAATGACTACCTGTCCTTTGGGAGTTAATTTGCTACTTTAA