VISDB Viral Integration Site DataBase

VIS ID

TVIS30011660

Fusion event

HIV-CCDC77 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

p13.33

Reference genome

Start

End

503324/394158 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-1273e ; hsa-mir-6807-5p ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-3175 ; hsa-mir-6878-5p ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-219b-3p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4433a-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-302f ; hsa-mir-4796-3p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-216b-3p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-4524a-3p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-1247-3p ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-890 ; hsa-mir-34b-3p ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6516-5p ; hsa-mir-6874-5p ; hsa-mir-455-3p ; hsa-mir-6880-5p ; hsa-mir-3622b-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6500-5p ; hsa-mir-4633-3p ; hsa-mir-4327 ; hsa-mir-6134 ; hsa-mir-3192-5p ; hsa-mir-7851-3p ; hsa-mir-5197-5p ; hsa-mir-490-3p

Nearest miRNA

hsa-let-7i/Downstream/1266157;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/4787, chr12-CpG: 25/Downstream/7199

Upstream sequence

tcacttgaaagctcaaattttattattgccaacaaataccattagttgttttcattgaagagattgactcactttgttcattttcaagaaaagatctgcc

Downstream sequence

gtatctaagtctgaacaaccatagtttgtctgttagtccttctggtgttctgtgaaaaaagtggctagttgagctggtattatttcctcgagaaaaccct