VISDB Viral Integration Site DataBase

VIS ID

TVIS30011665

Fusion event

HIV-CACNA1C integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

p13.33

Reference genome

Start

End

2472895/2363729 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-133a-3p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-4780 ; hsa-mir-6780b-3p ; hsa-mir-3938 ; hsa-mir-6791-5p ; hsa-mir-6778-5p ; hsa-mir-450a-2-3p ; hsa-mir-6857-5p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-6810-5p ; hsa-mir-2110 ; hsa-mir-3147 ; hsa-mir-4425 ; hsa-mir-185-3p ; hsa-mir-4283 ; hsa-mir-4489 ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-5001-5p ; hsa-mir-762 ; hsa-mir-4498 ; hsa-mir-4492 ; hsa-mir-7106-5p ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-4731-5p ; hsa-mir-6754-5p ; hsa-mir-4487 ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-29a-3p ; hsa-mir-208a-3p ; hsa-mir-208b-3p ; hsa-mir-103a-3p

Nearest miRNA

hsa-mir-3649/Upstream/703349; hsa-let-7i/Downstream/4599970;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/133280, chr12-CpG: 24/Downstream/315719

Upstream sequence

TAGAGCTTTTTTCTTTCTTTCCCCTGAAGGTGATCTCTGTATAAGAATAGCCACAATATGTGTGTGGGAGGTTTAGCAACATAACCTGGAAGATCTCTTA

Downstream sequence

CAGCCTCTGGAGTCTTGATTTCCTTGAGTGTCTTGGACTGGATAATGGTGTGTATTAAGGTTTGGGGTAGGGGGACGGTAAAGAATACCTCTGCTTCTTC