Basic Information
VIS ID
TVIS30011666
Fusion event
HIV-LOC105369609 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.32
Reference genome
GRCh37/hg19
Start
4005792/3896626 (Hg38)
End
4005792/3896626 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369609
Nearest miRNA
hsa-mir-3649/Upstream/2236246; hsa-let-7i/Downstream/3067073;
Nearest TSS
ENST00000382841/Upstream/23178; ENST00000545163/Downstream/2427;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/23084, chr12-CpG: 32/Downstream/134393
Nearby gene
PARP11(No orient, 23178)
Upstream sequence
AACAGTTCCTCCACATTCTTATTTAAAGCAAACTAAGCAACGCTTTTTATCATTTGTCAGATTTTTTTTTACCATGATGAGCCTAAATACACTGTACTGG
Downstream sequence
TTTCTAATCAGACCTCATTTGCAGCTGTGATTTTTGTGGTGGTTGttgttgttgtactattttgttttgttttgttgttttgttttCAAAGAATGAGAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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