Basic Information
VIS ID
TVIS30011675
Fusion event
HIV-LOC374443 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
9810235/9657639 (Hg38)
End
9810235/9657639 (Hg38)
Orient
-
Location type
ncRNA_exonic
Target gene
LOC374443
Nearest miRNA
hsa-mir-1244-3/Upstream/418088; hsa-let-7i/Downstream/2454313;
Nearest TSS
ENST00000382841/Upstream/9630; ENST00000487752/Downstream/7330;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/9383, chr12-CpG: 37/Downstream/453837
Upstream sequence
tgttgttattaaatgtattcccctgatcaaggtcactggcctagaaaacaaagattctgtgttttaccaagataattcccagtgcttcatggtgtcttta
Downstream sequence
ttaggctttgactgcttagggaaactgagccttaaaagggtaaaagtttttccatccatgtaactttctgaggtctttaggttgtcactctgattaaatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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