Basic Information
VIS ID
TVIS30011688
Fusion event
HIV-PTPRO integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
15713788/15560854 (Hg38)
End
15713788/15560854 (Hg38)
Orient
-
Location type
Intronic
Target gene
PTPRO
miRNAs that regulate target gene
hsa-mir-17-5p ; hsa-mir-26b-5p ; hsa-mir-20a-5p
Nearest miRNA
hsa-mir-1244-3/Upstream/2644936; hsa-let-7i/Downstream/2112445;
Nearest TSS
ENST00000382841/Upstream/14236; ENST00000538907/Downstream/4495;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/237887, chr12-CpG: 104/Downstream/227930
Upstream sequence
atctgatttaattttcccccgcaatcctgcagagagtattactagtcccattttagaaatgtggaaataggggcttacggagatttactgtcttagtagc
Downstream sequence
acattccactatgtacagaatccaggttccaaactcaggtctctctgaaatctattctttcctctgtaAAGAGCAGACTCCTTTAATTTCTTATTTTCTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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