Basic Information
VIS ID
TVIS30011690
Fusion event
HIV-PIK3C2G integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
18606912/18453978 (Hg38)
End
18606912/18453978 (Hg38)
Orient
-
Location type
Intronic
Target gene
PIK3C2G
Nearest miRNA
hsa-mir-1244-3/Upstream/780584; hsa-let-7i/Downstream/5758443;
Nearest TSS
ENST00000382841/Upstream/82797; ENST00000536931/Downstream/241059;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/2542378, chr12-CpG: 131/Downstream/675413
Upstream sequence
ATTCCATGCCAAAATTTACTCATTTGTTAGGAAGAGCCAAAAGTTGGCTTAATTCCACCCCTCTGCTTAGCATTTTATTAATGTAAAGCTTCTTGTAGTT
Downstream sequence
TTAAGTGCCACATAAATGCCTTTGTACACCTATCTGATACACGTCTTCTTTTCAAAACAGAGTTTTTCTACTAGTTTTTTTTACCAAGTAGAAATTAGTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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