VISDB Viral Integration Site DataBase

VIS ID

TVIS30011692

Fusion event

HIV-ETNK1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

p12.1

Reference genome

Start

End

22814706/22661772 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-21-5p ; hsa-mir-378a-5p ; hsa-mir-15b-5p ; hsa-mir-374a-5p ; hsa-mir-374b-5p ; hsa-mir-4639-5p ; hsa-mir-2113 ; hsa-mir-142-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548k ; hsa-mir-548l ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-4282 ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-5197-3p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-5590-3p ; hsa-mir-548av-5p ; hsa-mir-548ay-5p ; hsa-mir-8054 ; hsa-mir-548bb-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-195-5p ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-3606-3p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-130a-5p ; hsa-mir-23c ; hsa-mir-205-5p ; hsa-mir-499a-3p ; hsa-mir-499b-3p ; hsa-mir-1279 ; hsa-mir-199a-3p ; hsa-mir-199b-3p ; hsa-mir-936 ; hsa-mir-3129-5p ; hsa-mir-4330 ; hsa-mir-4695-3p ; hsa-mir-1245b-3p ; hsa-mir-7641 ; hsa-mir-222-5p ; hsa-mir-6504-3p ; hsa-mir-556-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-205-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-5010-3p ; hsa-mir-6847-3p ; hsa-mir-218-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/4988378; hsa-let-7i/Downstream/1550649;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/36493, chr12-CpG: 92/Downstream/1900250

Upstream sequence

TTGATTTGTTAGATATTTTGATACTAAGGAGAGAGCTACAGATGGAGGAGATATTATTTGTAGTTGCTCAAATTTATATCTACTAAAGTAATCAAGAAAC

Downstream sequence

CTTGGTAGATAATTTCAACATTTTTTGAGGTAGACTGATACTTTTTGGTGAAATGTTTTTGTGTTTATATTTGTACACTGTATTCAATTTCTGTTTTCAT