Basic Information
VIS ID
TVIS30011696
Fusion event
HIV-AMN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
31856973/31704039 (Hg38)
End
31856973/31704039 (Hg38)
Orient
-
Location type
Intronic
Target gene
AMN1
Nearest miRNA
hsa-mir-1244-3/Upstream/5829960; hsa-let-7i/Downstream/10619661;
Nearest TSS
ENST00000382841/Upstream/42102; ENST00000619086/Downstream/10912;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/44582, chr12-CpG: 51/Downstream/24952
Upstream sequence
tagccttattactaaaacaggATATGTTGTGAGAAATAAAGGTGTCTTGCTTATAACATATGCTATATATAACTATGCttattatcataaatgatattat
Downstream sequence
aatgaatatatgtgtgtacttttctattatcttcctgagatttctacaggaagtaaattgttgaattaataataagcaaatctttagaatttttaataat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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