Basic Information
VIS ID
TVIS30011698
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
32018493/31865559 (Hg38)
End
32018493/31865559 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/5991480; hsa-let-7i/Downstream/10458141;
Nearest TSS
ENST00000382841/Upstream/73318; ENST00000535606/Downstream/21644;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/73263, chr12-CpG: 80/Downstream/93668
Nearby gene
H3F3C(No orient, 73318)
Upstream sequence
ATAAAATAAAATAAATGTAAAAATGAAAAAACAAAAAGTGAAGTGTGAACAATAAGAAGTGTAAATCCTggccgggcatggtggctcacacctgtaatcc
Downstream sequence
cagcactttgggaggccgaggtaggtggatcacgaggtcaggagttcaagatcagcttggccaagatggtgaaaccccgcctcttctaaaaatacaaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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