Basic Information
VIS ID
TVIS30011727
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
53538590/53144806 (Hg38)
End
53538590/53144806 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA12A
Nearest miRNA
hsa-mir-1244-3/Upstream/87794; hsa-let-7i/Downstream/846932;
Nearest TSS
ENST00000382841/Upstream/41275; ENST00000550908/Downstream/14780;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/46635, chr12-CpG: 118/Downstream/35435
Nearby gene
CSAD(No orient, 12857)
Upstream sequence
gggaggctgaggtgggagaatcacttgagccctggaagctgagatttcagtgagccaaaatcacactgctgcactctagcctcagtgacaagagtgagac
Downstream sequence
cctgtcccaaaacaaacaaacaataacagaaatatatccggacagttcccaaatatttggaatctgaagaacacatttctaaataaaccataaatcaaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate