Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene532480055315766353180909531913185320730753180700531951415317932353184112531974085319944253199747532016195319273453194172531595865316100053158997531601385317480253175906531725715317312653186598531870325319019753190366531872575318734053202834
Basic Information
VIS ID
TVIS30011730
Fusion event
HIV-ITGB7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
53596618/53202834 (Hg38)
End
53596618/53202834 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12A
Target gene
ITGB7
Nearest miRNA
hsa-mir-1244-3/Upstream/145822; hsa-let-7i/Downstream/788904;
Nearest TSS
ENST00000382841/Upstream/1534; ENST00000635789/Downstream/4417;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/4851, chr12-CpG: 152/Downstream/17098
Upstream sequence
ggcagatcacaaggtcaggagttcaagaccagcctggctaacatagtgaaaccccgtctctactaaaaatacaaaaattagccgggtgtagtggcacacg
Downstream sequence
ccACCACTTTTTCTCAAAAAATAAAAGGTGCTTTCAacatgcaaaagaatgaagttggaccccctccccacctcacaccatatacaaaggttaactgaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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