Basic Information
VIS ID
TVIS30011735
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
55145179/54751395 (Hg38)
End
55145179/54751395 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA12A
Nearest miRNA
hsa-mir-1244-3/Upstream/414081; hsa-let-7i/Downstream/2443109;
Nearest TSS
ENST00000382841/Upstream/68422; ENST00000547958/Downstream/79124;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/162588, chr12-CpG: 33/Downstream/894809
Nearby gene
DCD(No orient, 102902)
Nearest cancer related gene
DCD(OG, No orient, 102902)
Upstream sequence
atataacttaaaaagggttcaaagaattgagttacattgttgaaaacgtttatctatttttgtcaactgatttatttgaaatgatattgtcagtgcttac
Downstream sequence
aaataaaagtaggaaatacaagtagctttgatgctgaactctgtataattaagtaacattcattcttagcttcatgaactaattggagaaagtcccatct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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