Basic Information
VIS ID
TVIS30011736
Fusion event
HIV-TESPA1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
55362101/54968317 (Hg38)
End
55362101/54968317 (Hg38)
Orient
+
Location type
Intronic
Target gene
TESPA1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-6071 ; hsa-mir-6828-3p ; hsa-mir-589-3p ; hsa-mir-8063 ; hsa-mir-96-3p ; hsa-mir-2681-3p ; hsa-mir-29c-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-551b-5p ; hsa-mir-185-3p ; hsa-mir-3151-5p ; hsa-mir-3159 ; hsa-mir-4283 ; hsa-mir-4489 ; hsa-mir-4651 ; hsa-mir-4675 ; hsa-mir-4687-3p ; hsa-mir-4741 ; hsa-mir-608 ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6782-5p ; hsa-mir-92a-2-5p ; hsa-mir-1910-3p ; hsa-mir-2682-5p ; hsa-mir-342-3p ; hsa-mir-34b-5p ; hsa-mir-4423-3p ; hsa-mir-449c-5p ; hsa-mir-5692a ; hsa-mir-6511a-5p ; hsa-mir-6808-5p ; hsa-mir-6818-3p ; hsa-mir-6893-5p ; hsa-mir-940
Nearest miRNA
hsa-mir-1244-3/Upstream/631003; hsa-let-7i/Downstream/2226187;
Nearest TSS
ENST00000382841/Upstream/5620; ENST00000547559/Downstream/5237;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/379510, chr12-CpG: 33/Downstream/677887
Upstream sequence
GGGAGAATTACATTCATAGAAGCAGGCGTTTGCATGCCATAATTTCCAAATCACAAATATAAATTTCTAGGTTTTCTTAAAACTTTTAGATCACCTTAAC
Downstream sequence
TACCCACACTTCCTTCCTTCTCTCTGAACCATGTTATTGCTGAATATCATGTCACTCAGGAAACAGCAGAAATTGTATCCTGGTTAGAGATATTTTAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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