Basic Information
VIS ID
TVIS30011740
Fusion event
HIV-PAN2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
56711883/56318099 (Hg38)
End
56711883/56318099 (Hg38)
Orient
+
Location type
Intronic
Target gene
PAN2
miRNAs that regulate target gene
hsa-mir-222-3p ; hsa-mir-29a-3p ; hsa-mir-770-5p ; hsa-mir-377-5p ; hsa-mir-5587-5p ; hsa-mir-4764-3p ; hsa-mir-6801-5p ; hsa-mir-6131 ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-3663-5p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-4446-5p ; hsa-mir-3679-3p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6726-3p ; hsa-mir-6826-3p ; hsa-mir-3144-3p ; hsa-mir-4294 ; hsa-mir-1249-3p ; hsa-mir-454-5p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-875-5p ; hsa-mir-6782-3p
Nearest miRNA
hsa-mir-1244-3/Upstream/1980785; hsa-let-7i/Downstream/876405;
Nearest TSS
ENST00000382841/Upstream/1763; ENST00000622119/Downstream/475;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1773, chr12-CpG: 31/Downstream/15778
Upstream sequence
aatcctgtttctacaaaaagtacaaaaattagctgggtgtggtggtgtgtgcctgttgtcccaggtacttgggaggctgaggtgggagaatcacttgagc
Downstream sequence
ccaggaagtcgaggctgcagtgagctgtaatcacgctactgcacttcagcctgggtgacagagtgagaccctgtcacaaacaaacaaaatacaaaaTCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate