VISDB Viral Integration Site DataBase

VIS ID

TVIS30011747

Fusion event

HIV-RAP1B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q15

Reference genome

Start

End

69023004/68629224 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-518b ; hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-28-5p ; hsa-mir-139-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-875-3p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-3978 ; hsa-mir-8062 ; hsa-mir-1243 ; hsa-mir-3654 ; hsa-mir-101-3p ; hsa-mir-374a-5p ; hsa-mir-374b-5p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-651-3p ; hsa-mir-3613-3p ; hsa-mir-4495 ; hsa-mir-494-3p ; hsa-mir-4261 ; hsa-mir-4496 ; hsa-mir-100-5p ; hsa-mir-580-3p ; hsa-mir-513a-5p ; hsa-mir-27b-3p ; hsa-mir-3681-3p ; hsa-mir-27a-3p ; hsa-mir-128-3p ; hsa-mir-216a-3p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-6883-3p ; hsa-mir-642b-5p ; hsa-mir-454-5p ; hsa-mir-380-3p ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-510-3p ; hsa-mir-422a ; hsa-mir-378i ; hsa-mir-378h ; hsa-mir-378f ; hsa-mir-378e ; hsa-mir-378d ; hsa-mir-378c ; hsa-mir-378b ; hsa-mir-378a-3p ; hsa-mir-4638-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-518f-3p

Nearest miRNA

hsa-let-7i/Upstream/2378067; hsa-mir-1178/Downstream/643933;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/17627, chr12-CpG: 38/Downstream/57576

Upstream sequence

cacaggcatgcaccaccatgcccaggtaattttttgtagagacaaggtttcacaatgtttcccagtctggtatcgaactcctgagctcaagccatctacc

Downstream sequence

taccccagcctctcaaagtgctaggattacaggcgtgagcccttgtgcccagccAAATCCTTTATCTAAAGACAGTACCTTATTTTCATTGTTGCTCTGA