VISDB Viral Integration Site DataBase

VIS ID

TVIS30011751

Fusion event

HIV-MDM2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q15

Reference genome

Start

End

69207743/68813963 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-143-3p ; hsa-mir-145-5p ; hsa-mir-18b-5p ; hsa-mir-605-5p ; hsa-mir-504-5p ; hsa-mir-26b-5p ; hsa-mir-484 ; hsa-mir-92a-3p ; hsa-mir-3929 ; hsa-mir-410-3p ; hsa-mir-17-5p ; hsa-mir-221-3p ; hsa-mir-661 ; hsa-mir-218-5p ; hsa-mir-6516-5p ; hsa-mir-500a-3p ; hsa-mir-6499-3p ; hsa-mir-767-5p ; hsa-mir-92b-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-508-5p ; hsa-mir-3145-5p ; hsa-mir-4776-3p ; hsa-mir-192-3p ; hsa-mir-223-3p ; hsa-mir-4697-3p ; hsa-mir-4470 ; hsa-mir-935 ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-4742-5p ; hsa-mir-330-3p ; hsa-mir-205-3p ; hsa-mir-4465 ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-222-3p ; hsa-mir-6074 ; hsa-mir-4272 ; hsa-mir-5580-3p ; hsa-mir-3692-3p ; hsa-mir-6505-5p ; hsa-mir-202-3p ; hsa-mir-432-5p ; hsa-mir-335-5p ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-6864-5p ; hsa-mir-6126 ; hsa-mir-1252-5p ; hsa-mir-1322 ; hsa-mir-651-3p ; hsa-mir-3662 ; hsa-mir-4537 ; hsa-mir-483-3p ; hsa-mir-335-3p ; hsa-mir-4711-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-5682 ; hsa-mir-6871-3p ; hsa-mir-29c-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-376c-3p ; hsa-mir-3926 ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-95-5p ; hsa-mir-1278 ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-4694-3p ; hsa-mir-7850-5p ; hsa-mir-552-5p ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-4531 ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-496 ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-656-3p ; hsa-mir-5680 ; hsa-mir-590-3p ; hsa-mir-758-3p ; hsa-mir-6808-3p ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-4307 ; hsa-mir-4729 ; hsa-mir-561-3p ; hsa-mir-548at-5p ; hsa-mir-5696 ; hsa-mir-4266 ; hsa-mir-499a-5p ; hsa-mir-208b-3p ; hsa-mir-208a-3p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-571 ; hsa-mir-556-5p ; hsa-mir-4433b-3p ; hsa-mir-4797-5p ; hsa-mir-944 ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-1305 ; hsa-mir-550a-3p ; hsa-mir-200c-5p ; hsa-mir-5010-3p ; hsa-mir-2113 ; hsa-mir-1185-2-3p ; hsa-let-7f-2-3p ; hsa-mir-1185-1-3p ; hsa-mir-4789-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-381-3p ; hsa-mir-4666a-3p ; hsa-mir-300 ; hsa-mir-526b-5p ; hsa-mir-4635 ; hsa-mir-6873-3p ; hsa-mir-6879-3p ; hsa-mir-3620-3p ; hsa-mir-6865-3p ; hsa-mir-127-5p ; hsa-mir-7843-3p ; hsa-mir-1324 ; hsa-mir-2052 ; hsa-mir-1273g-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-1273a ; hsa-mir-3117-5p ; hsa-mir-4486 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-425-5p ; hsa-mir-8055 ; hsa-mir-548s ; hsa-mir-3606-5p ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-3190-5p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-339-5p ; hsa-mir-340-5p ; hsa-mir-610 ; hsa-mir-3658 ; hsa-mir-4282 ; hsa-mir-6758-3p ; hsa-mir-1228-5p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-30b-3p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4683 ; hsa-mir-4728-5p ; hsa-mir-4786-5p ; hsa-mir-541-3p ; hsa-mir-6089 ; hsa-mir-6134 ; hsa-mir-6502-3p ; hsa-mir-654-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6888-5p ; hsa-mir-7106-5p

Nearest miRNA

hsa-let-7i/Upstream/2562806; hsa-mir-1178/Downstream/459194;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/5080, chr12-CpG: 95/Downstream/118943

Nearest cancer related gene

MDM2(OG, No orient, 0)

Upstream sequence

ttatgctgtcaaccctttggtagactccttcccagaatcatgtttttaaatgtatgaaataaaatgtatagaattacaaaggaaacatactaaaatacgg

Downstream sequence

ttaccaaaatagtaaactagtttgtgatatgtgtgcttttgttattaacataataaatactaagatttagaagaagatataataaatataatgttttttt