Basic Information
VIS ID
TVIS30011754
Fusion event
HIV-TRHDE integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
72541892/72148112 (Hg38)
End
72541892/72148112 (Hg38)
Orient
-
Location type
Intronic
Target gene
TRHDE
Nearest miRNA
hsa-let-7i/Upstream/2563289; hsa-mir-1178/Downstream/7271145;
Nearest TSS
ENST00000382841/Upstream/60846; ENST00000552503/Downstream/124571;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/308257, chr12-CpG: 160/Downstream/123791
Nearby gene
TRHDE-AS1(No orient, 105395)
Upstream sequence
ttttcacactgtacatcaaatgacatgacttaccttatttaaactttaaagaatcccaggagatgagcagaacaaatatttgtattttagatgtgacaaa
Downstream sequence
aagatctcagagaggtgagttgcttgctcaggatcatggtgcttataaataacaaaatccagaacttctaattcctaggAGATAACTCTTTTATTTTTCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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