Basic Information
VIS ID
TVIS30011755
Fusion event
HIV-LOC105369844 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
76190149/75796369 (Hg38)
End
76190149/75796369 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369844
Nearest miRNA
hsa-let-7i/Upstream/6211546; hsa-mir-1178/Downstream/3622888;
Nearest TSS
ENST00000382841/Upstream/97553; ENST00000549888/Downstream/168071;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/284631, chr12-CpG: 142/Downstream/234694
Nearby gene
PHLDA1(No orient, 229078)
Upstream sequence
TTTTACTTGAAAATTGCAGTGCCCACTATACCAATGGGGATAATCTATGATGAAAAGATCAGCTTCCCTTATGTATCAGGGTCTCCACTATAGATCTCAT
Downstream sequence
GAGACAATATCTAGATGTTAATGTCTAGGTATCAAAGAAACAGAACATTATTTCATTTCAACTAGAAATGATGCTTAAATTATTCAATTTAATTAAATTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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