Basic Information
VIS ID
TVIS30011761
Fusion event
HIV-LOC105369896 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
91852175/91458398 (Hg38)
End
91852175/91458398 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12B
Target gene
LOC105369896
Nearest miRNA
hsa-let-7i/Upstream/4713249; hsa-mir-1178/Downstream/3103391;
Nearest TSS
ENST00000382841/Upstream/96202; ENST00000617041/Downstream/176489;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/504079, chr12-CpG: 128/Downstream/686536
Nearby gene
DCN(No orient, 275274)
Upstream sequence
TGTTCTTGGGAAATACCTCTCGTCCTCTGGGATGATGTACACAATAAAGCATTCATGGTTTTAGTGGCAGCCAGAGGCCCACCAGGCCTGTGCGACAATG
Downstream sequence
GTACTTGGACTGAATAGTTTGCAGTCCCCTCAAGATATTGTACTAAGAGCTCTTCCAAATGTTTTGTAAGTTCTTTGCCCTATTCATAGGCTTTTGGGTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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