Basic Information
VIS ID
TVIS30011762
Fusion event
HIV-LOC105369901 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
92327399/91933623 (Hg38)
End
92327399/91933623 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12B
Target gene
LOC105369901
Nearest miRNA
hsa-let-7i/Upstream/5188474; hsa-mir-1178/Downstream/2628166;
Nearest TSS
ENST00000382841/Upstream/32165; ENST00000618125/Downstream/211610;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/979304, chr12-CpG: 128/Downstream/211311
Nearby gene
LINC01619(No orient, 51353)
Upstream sequence
ctaaggttacatgaaaatgcaaaagatttaaaatatccaaaaatgatcttaaaaatgaaaagaaaatgtggagacaaaagctacttattttaagacgtac
Downstream sequence
taccaaacaacagtaatcaagacaggataagtgcaaggacagactgatagatcaatggaaaaaaagagagtccagaaataaactcatacatataaggtca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate