Basic Information
VIS ID
TVIS30011763
Fusion event
HIV-LINC01619 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
92519342/92125566 (Hg38)
End
92519342/92125566 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA12B
Target gene
LINC01619
Nearest miRNA
hsa-let-7i/Upstream/5380417; hsa-mir-1178/Downstream/2436223;
Nearest TSS
ENST00000382841/Upstream/224108; ENST00000618125/Downstream/19667;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1171247, chr12-CpG: 128/Downstream/19368
Upstream sequence
TTTCCATGTCCAGGCTTCTTTTTCTATTGAACACATCCCTCAACAAGGAGCCATTTTTTCCCATGTTCTTCAGAAAGTTACCATGTACATGTTTTGGGTA
Downstream sequence
TAAGAGAGAAGACACAGGAGCCACATTTACCTTCAAACTAAAATCAAAATTAAAACAACCAGATTGAAAAAAAGAAGAAATTCAAAATTCAGAAAGGAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate