Basic Information
VIS ID
TVIS30011764
Fusion event
HIV-LOC101928617 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
92572387/92178611 (Hg38)
End
92572387/92178611 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12B
Target gene
LOC101928617
Nearest miRNA
hsa-let-7i/Upstream/5433462; hsa-mir-1178/Downstream/2383178;
Nearest TSS
ENST00000382841/Upstream/32164; ENST00000508671/Downstream/185221;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/32054, chr12-CpG: 133/Downstream/749955
Nearby gene
BTG1(No orient, 32714)
Upstream sequence
TCACCAAGAATCTAGGTGTGATGGGAGGGGAGGTGGAGGTGAACTTCACAAAGTCTAGAGATCACCCATTTCACACATTCCAAGAGCTGAAAATAAGTGT
Downstream sequence
TCTTGCACCTCCAAAGTTATTCTCACAAAACGAGGTGCAATGATAAGTTAACATCTAGGTTTCAGTTACCACTTAGCTGCAGGGGAGTTTTAGAAATTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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